Genetics Portal Pipeline
Method
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opentargets/genetics_etl_python
Genetics Portal Pipeline
opentargets/genetics_etl_python
Home
Environment configuration and contributing changes
Roadmap
Troubleshooting
Components
Components
Dataset
Dataset
Colocalisation
Gene index
Intervals
LD index
Study Locus Overlap
Summary statistics
Variant annotation
Variant index
Variant to gene
Study index
Study index
Study index finngen
Study index gwas catalog
Study locus
Study locus
Study locus gwas catalog
Method
Method
Clumping
coloc
eCAVIAR
LD annotator
PICS
Window-based clumping
Step
Step
Colocalisation
FinnGen
Gene index
GWAS Catalog
GWAS Catalog sumstat preprocess
LD index
UKBiobank
Variant annotation
Variant index
V2G
Method
Methods used accross the Open Targets Genetics Pipeline
2023-01-20
2023-05-25
Contributors
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