Open Targets Gentropy

Development

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opentargets/gentropy

Open Targets Gentropy
Installation
How-to
Roadmap
Development
Python API

Open Targets Gentropy

opentargets/gentropy

Open Targets Gentropy
Installation
How-to
How-to
- Command line
  Command line
  - Run step in CLI
  - Run step using YAML config
- Python api
  Python api
Roadmap
Development
Development
Python API
Python API
- Common
  Common
  - Literal Types
  - VersionEngine
- Datasets
  Datasets
- Datasources
  Datasources
  - Ensembl
    
    Ensembl
    
    Variant effector parser
  - Eqtl catalogue
    
    Eqtl catalogue
    
    Fine mapping results
    
    Study Index
    
    Summary Stats
  - Finngen
    
    Finngen
    
    Finemapping
    
    Study Index
    
    Study Index
  - Gnomad
    
    Gnomad
    
    LD Matrix
    
    Variants
  - Gwas catalog
    
    Gwas catalog
    
    Associations
    
    Study Index
    
    Study Splitter
    
    Summary statistics
  - Intervals
    
    Intervals
    
    Andersson et al.
    
    Javierre et al.
    
    Jung et al.
    
    Thurman et al.
  - Open targets
    
    Open targets
    
    L2G Gold Standard
    
    Target
  - Ukb ppp eur
    
    Ukb ppp eur
    
    Study Index
    
    Summary Statistics
- Methods
  Methods
  - CARMA
  - Clumping
  - Coloc
  - eCAVIAR
  - LDAnnotator
  - PICS
  - Summary Statistics Imputation
  - QC of GWAS Summary Statistics
  - SuSiE-inf
  - L2g
    
    L2g
    
    L2G Feature Factory
    
    L2G Model
    
    L2G Trainer
- Steps
  Steps

Development

This section contains various technical information on how to develop and run the code.

2023-10-09
2023-10-09
Contributors

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