types

gentropy.common.types

Types and type aliases used in the package.

GWASEffect

Bases: NamedTuple

Components of GWAS effect.

Attributes:

Name	Type	Description
beta	Column	Effect.
standard_error	Column	Effect standard error.

Source code in src/gentropy/common/types.py

class GWASEffect(NamedTuple):
    """Components of GWAS effect.

    Attributes:
        beta (Column): Effect.
        standard_error (Column): Effect standard error.
    """

    beta: Column
    standard_error: Column

PValComponents

Bases: NamedTuple

Components of p-value.

Attributes:

Name	Type	Description
mantissa	Column	Mantissa of the p-value.
exponent	Column	Exponent of the p-value.

Source code in src/gentropy/common/types.py

class PValComponents(NamedTuple):
    """Components of p-value.

    Attributes:
        mantissa (Column): Mantissa of the p-value.
        exponent (Column): Exponent of the p-value.
    """

    mantissa: Column
    exponent: Column

gentropy.common.types.LD_Population = Literal['afr', 'amr', 'asj', 'eas', 'est', 'fin', 'nfe', 'nwe', 'seu'] module-attribute

gentropy.common.types.VariantPopulation = Literal['afr', 'amr', 'ami', 'asj', 'eas', 'fin', 'nfe', 'mid', 'sas', 'remaining'] module-attribute

gentropy.common.types.DataSourceType = Literal['gnomad', 'finngen', 'gwas_catalog', 'eqtl_catalog', 'ukbiobank', 'open_targets', 'intervals'] module-attribute

gentropy.common.types.GWASEffect

Bases: NamedTuple

Components of GWAS effect.

Attributes:

Name	Type	Description
beta	Column	Effect.
standard_error	Column	Effect standard error.

Source code in src/gentropy/common/types.py

class GWASEffect(NamedTuple):
    """Components of GWAS effect.

    Attributes:
        beta (Column): Effect.
        standard_error (Column): Effect standard error.
    """

    beta: Column
    standard_error: Column

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• 2024-05-28
• 2025-07-08
• Contributors
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