IDIC fine-mapping pipeline
==========================

IDIC is an Open Targets workflow for fine-mapping GWAS summary statistics at
scale. It uses Nextflow for orchestration, containerized execution, Open
Targets Gentropy-compatible data models, and pan-UK Biobank linkage
disequilibrium resources.

.. toctree::
   :maxdepth: 2
   :caption: Pipeline documentation

   user-guide/overview
   user-guide/execution
   user-guide/workflows
   user-guide/qc-validation
   user-guide/locus-processing
   user-guide/fine-mapping-routes
   benchmarks/hailing-ducks-ld-annotation
   api/collector
   presentations/index

Indices and tables
------------------

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`