L2G Feature

gentropy.method.l2g.feature_factory.L2GFeature dataclass

Bases: Dataset

Locus-to-gene feature dataset.

Source code in src/gentropy/dataset/l2g_feature.py

@dataclass
class L2GFeature(Dataset):
    """Locus-to-gene feature dataset."""

    @classmethod
    def get_schema(cls: type[L2GFeature]) -> StructType:
        """Provides the schema for the L2GFeature dataset.

        Returns:
            StructType: Schema for the L2GFeature dataset
        """
        return parse_spark_schema("l2g_feature.json")

get_schema() -> StructType classmethod

Provides the schema for the L2GFeature dataset.

Returns:

Name	Type	Description
StructType	StructType	Schema for the L2GFeature dataset

Source code in src/gentropy/dataset/l2g_feature.py

@classmethod
def get_schema(cls: type[L2GFeature]) -> StructType:
    """Provides the schema for the L2GFeature dataset.

    Returns:
        StructType: Schema for the L2GFeature dataset
    """
    return parse_spark_schema("l2g_feature.json")

Schema

root
 |-- studyLocusId: long (nullable = false)
 |-- geneId: string (nullable = false)
 |-- featureName: string (nullable = false)
 |-- featureValue: float (nullable = false)

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• 2023-11-01
• 2024-01-18
• Contributors
• •